发布网友 发布时间:2022-04-08 05:05
共2个回答
懂视网 时间:2022-04-08 09:27
Dr. Chris Rose写的一个完整的程序,在他的程序基础上做了些修改,成功的将图像格式转换成了PNG格式。他的程序链接见http://microserf.org.uk/academic/Software.html从上面给出的链接下载到的程序中,有用户手册告诉你怎么使用这个程序。这个程序是用Ruby语言写的,需要在Cygwin下运行,用户手册中有介绍如何安装Cygwin及其他需要的工具。程序工作流程是使用者手动输入图像名称,程序先从FTP上下载该图像,然后经过几步转换,最终转换为PNG格式。我在按照用户手册运行这个程序时没有成功,用VS2013打开get-ddsm-mammo文件查看源码,发现是从FTP上下载图像环节出了问题,做了修改后,最终运行成功。我修改后的程序如下:
#!/usr/bin/ruby # This program gets a specified mammogram from the DDSM website and # converts it to a PNG image. See the help message for full details. require 'net/ftp' # Specify the name of the info-file. def info_file_name 'info-file.txt' end def image_names 'image_name.txt' end # Get an FTP file as specified by a DDSM path (e.g., # /pub/DDSM/cases/cancers/cancer_06/case1141/A-1141-1.ics) and return the # local path to the file, or return nil if the file could not be dowloaded. def get_file_via_ftp(ddsm_path) ftp = Net::FTP.new('figment.csee.usf.edu') ftp.passive = true ftp.login ftp.chdir(File.dirname(ddsm_path)) puts File.basename(ddsm_path) ftp.getbinaryfile(File.basename(ddsm_path)) #ftp.getbinaryfile(ddsm_path) # Will be stored local to this program, under the same file name # Check to make sure that we managed to get the file. if !FileTest.exist?(File.basename(ddsm_path)) puts "Could not get the file #{File.basename(ddsm_path)} from the DDSM FTP server; perhaps the server is busy." exit(-1) end return File.basename(ddsm_path) end # Return the string input with the system's filesep at the end; if there # is one there already then return input. def ensure_filesep_terminated(input) if input[input.length-1].chr != File::SEPARATOR input += File::SEPARATOR end return input end # Check program input; input is the program input (i.e ARGV). def check_inputs(input) if input.length != 1 puts get_help exit(-1) end # See if the user wanted the help docs. if input[0] == '--help' puts get_help exit(-1) end # Check to make sure that the info file exists. if !FileTest.exist?(info_file_name) puts "The file #{info_file_name} does not exist; use catalogue-ddsm-ftp-server.rb" exit(-1) end end # Given the name of a DDSM image, return the path to the # .ics file associated with the image name. If we can't find the # path, then we return nil. def get_ics_path_for_image(image_name) # Does image_name look right? if image_name[/._d{4,4}_...+/].nil? raise 'image_name seems to be wrong. It is: ' + image_name end # Edit the image name, as .ics files have the format 'A-0384-1.ics'; # there is no '.RIGHT_CC' (for example). image_name = image_name[0..(image_name.rindex('.')-1)] # Strip everything after and including the last '.'. image_name[1] = '-' image_name[6] = '-' # Change the '_'s to '-'s (better regexp-based approach?). image_name+='.ics' # Add the file suffix. # Get the path to the .ics file for the specified image. File.open(info_file_name) do |file| file.each_line do |line| # Does this line specify the .ics file for the specified image name? if !line[/.+#{image_name}/].nil? # If so, we can stop looking return line end end end # If we get here, then we did not find a match, so we will return nil. return nil end # Given a line from a .ics file, return a string that specifies the # number of rows and cols in the image described by the line. The # string would be '123 456' if the image has 123 rows and 456 cols. def get_image_dims(line) rows = line[/.+LINESsd+/][/d+/] cols = line[/.+PIXELS_PER_LINEsd+/][/PIXELS_PER_LINEsd+/][/d+/] return rows + ' ' + cols end # Given an image name and a string representing the location of a # local .ics file, get the image dimensions and digitizer name for # image_name. Return a hash which :image_dims maps to a string of the # image dims (which would be '123 456' if the image has 123 rows and # 456 cols) and :digitizer maps to the digitizer name. If we can't # determine the dimensions and/or digitizer name, the corresponding # entry in the hash will be nil. def get_image_dims_and_digitizer(image_name, ics_file) # Get the name of the image view (e.g. 'RIGHT_CC') image_view = image_name[image_name.rindex('.')+1..image_name.length-1] image_dims = nil digitizer = nil # Read the image dimensions and digitizer name from the file. File.open(ics_file, 'r') do |file| file.each_line do |line| if !line[/#{image_view}.+/].nil? # Read the image dimensions image_dims = get_image_dims(line) end if !line[/DIGITIZER.+/].nil? # Read the digitizer type from the file. digitizer = line.split[1].downcase # Get the second word in the DIGITIZER line. # There are two types of Howtek scanner and they are # distinguished by the first letter in image_name. if digitizer == 'howtek' if image_name[0..0].upcase == 'A' digitizer += '-mgh' elsif image_name[0..0].upcase == 'D' digitizer += '-ismd' else raise 'Error trying to determine Howtek digitizer variant.' end end end end end # Return an associative array specifying the image dimensions and # digitizer used. return {:image_dims => image_dims, :digitizer =>digitizer} end # Given the name of a DDSM image, return a string that describes # the image dimensions and the name of the digitizer that was used to # capture it. If def do_get_image_info(image_name) # Get the path to the ics file for image_name. ftp_path = get_ics_path_for_image(image_name) ftp_path.chomp! # Get the ics file; providing us with a string representing # the local location of the file. ics_file = get_file_via_ftp(ftp_path) # Get the image dimensions and digitizer for image_name. image_dims_and_digitizer = get_image_dims_and_digitizer(image_name, ics_file) # Remove the .ics file as we don't need it any more. File.delete(ics_file) return image_dims_and_digitizer end # Given a mammogram name and the path to the image info file, get the # image dimensions and digitizer name string. def get_image_info(image_name) # Get the image dimensions and digitizer type for the specified # image as a string. image_info = do_get_image_info(image_name) # Now output the result to standard output. all_ok = !image_info[:image_dims].nil? && !image_info[:digitizer].nil? # Is everything OK? if all_ok ret_val = image_info[:image_dims] + ' ' + image_info[:digitizer] end return ret_val end # Return a non-existant random filename. def get_temp_filename rand_name = "#{rand(10000000)}" # A longish string if FileTest.exist?(rand_name) rand_name = get_temp_filename end return rand_name end # Retrieve the LJPEG file for the mammogram with the specified # image_name, given the path to the info file. Return the path to the # local file if successful. If we can't get the file, then return nil. def get_ljpeg(image_name) # Get the path to the image file on the mirror of the FTP server. path = nil File.open(info_file_name) do |file| file.each_line do |line| if !line[/.+#{image_name}.LJPEG/].nil? # We've found it, so get the file. line.chomp! local_path = get_file_via_ftp(line) return local_path end end end # If we get here we didn't find where the file is on the server. return nil end # Given the path to the dir containing the jpeg program, the path to a # LJPEG file, convert it to a PNM file. Return the path to the PNM # file. def ljpeg_to_pnm(ljpeg_file, dims_and_digitizer) # First convert it to raw format. command = "./jpeg.exe -d -s #{ljpeg_file}" `#{command}` # Run it. raw_file = ljpeg_file + '.1' # The jpeg program adds a .1 suffix. # See if the .1 file was created. if !FileTest.exist?(raw_file) raise 'Could not convert from LJPEG to raw.' end # Now convert the raw file to PNM and delete the raw file. command = "./ddsmraw2pnm.exe #{raw_file} #{dims_and_digitizer}" pnm_file = `#{command}` File.delete(raw_file) if $? != 0 raise 'Could not convert from raw to PNM.' end # Return the path to the PNM file. return pnm_file.split[0] end # Convert a PNM file to a PNG file. pnm_file is the path to the pnm file # and target_png_file is the name of the PNG file that we want created. def pnm_to_png(pnm_file, target_png_file) command = "convert -depth 16 #{pnm_file} #{target_png_file}" `#{command}` if !FileTest.exist?(target_png_file) raise 'Could not convert from PNM to PNG.' end return target_png_file end #write image_names to image_nama.txt def write_image_names(name) namefile=File.open(image_names,'a') namefile.puts name namefile.puts " " namefile.close end # The entry point of the program. def main # Check to see if the input is sensible. #check_inputs(ARGV) #image_name = ARGV[0] File.open('read_names.txt','r') do |file| file.each_line do |line| image_name = line image_name.chomp! # Get the image dimensions and digitizer name string for the # specified image. image_info = get_image_info(image_name) # Get the LJPEG file from the mirror of the FTP site, returning the # path to the local file. ljpeg_file = get_ljpeg(image_name) # Convert the LJPEG file to PNM and delete the original LJPEG. pnm_file = ljpeg_to_pnm(ljpeg_file, image_info) File.delete(ljpeg_file) # Now convert the PNM file to PNG and delete the PNG file. target_png_file = image_name + '.png' png_file = pnm_to_png(pnm_file, target_png_file) File.delete(pnm_file) # Test to see if we got something. if !FileTest.exist?(png_file) raise 'Could not create PNG file.' exit(-1) end # Display the path to the file. puts File.expand_path(png_file) #write image name write_image_names(image_name) #exit(0) end end exit(0) end # The help message def get_help <<END_OF_HELP This program gets a specified mammogram from a local mirror of the DDSM FTP Server, converts it to a PNG image and saves it to a target directory; if the target directory already contains a suitably-named file, the download and conversion are skipped. Call this program using: ruby get-ddsm-mammo.rb <image-name> (Note: the '\' simply indicates that the above command should be on one line.) where: * <image-name> is the name of the DDSM image you want to get and convert, for example: 'A_1141_1.LEFT_MLO'. If successful, the program will print the path to the PNG file of the requested mammogram to standard output and will return a status code of 0. If unsuccessful, the program should display a useful error message and return a non-zero status code. END_OF_HELP end # Call the entry point. main很麻烦的一点是,原程序运行需要手动依次输入图像名称,一次只能处理一张图像,一张图像处理完后才能处理下一张,很费时费力,所以在上面贴出的程序中我还做了一点修改,可以批量处理图像。方法是将要处理的图像的名称提前写在一个txt文件里,命名为read_names,运行程序只需输入 ./get-ddsm-mammo即可。程序运行界面如下:
每处理完一张图像,程序会将图像的名称写在一个名为image_name的txt文件里,所以在运行程序前要先创建一个名为image_name的txt文件。
最后一点要说明的是,用户手册中提到在安装Cygwin时要同时安装Ruby,因为当时的Cygwin版本较低,Ruby已不在手册中所示位置,而是单独拿出来的,要安装如下图所示的两个:
和
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DDSM数据库转换图像格式——LJPEG转为PNG格式
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热心网友 时间:2022-04-08 06:35
截到图片后打开画图,然后另存为,在下面有个保存格式,里面就有选择的